Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide epimerase | IZT61_11600 | Q8A861 | Positive | 2854863 - 2855894 | 38214.3 |
| hypothetical protein | IZT61_11605 | Not Available | Negative | 2855872 - 2856069 | 7598.45 |
| rhodanese-like domain-containing protein | IZT61_11610 | P9WMN6 | Negative | 2856195 - 2856512 | 11903.1 |
| duf4407 domain-containing protein | IZT61_11615 | Not Available | Positive | 2856642 - 2857772 | 42820.2 |
| m61 family metallopeptidase | IZT61_11620 | Not Available | Positive | 2857852 - 2859684 | 68247.5 |
| m20/m25/m40 family metallo-hydrolase | IZT61_11625 | F0URV0 | Positive | 2859704 - 2861011 | 47745.0 |
| carbamoyl-phosphate synthase large subunit | IZT61_11630 | O28994 | Negative | 2861776 - 2864613 | 104840.0 |
| carboxypeptidase regulatory-like domain-containing protein | IZT61_11635 | Not Available | Negative | 2864826 - 2865143 | 11092.6 |
| nicotinamide mononucleotide transporter | IZT61_11640 | P0AFK2 | Positive | 2865600 - 2866217 | 24165.0 |
| atp-binding protein | IZT61_11645 | P24518 | Positive | 2866201 - 2866731 | 20277.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

