Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome assembly cofactor rimp | IZT61_11550 | A5FJF7 | Negative | 2845105 - 2845569 | 17339.1 |
| hypothetical protein | IZT61_11555 | Not Available | Negative | 2845691 - 2846122 | 15794.1 |
| phage holin family protein | IZT61_11560 | Q53868 | Positive | 2846141 - 2846485 | 12079.5 |
| acyl-coa dehydrogenase | IZT61_11565 | P45867 | Negative | 2846557 - 2847696 | 41819.2 |
| flippase-like domain-containing protein | IZT61_11570 | Not Available | Negative | 2848208 - 2849188 | 37015.6 |
| aspartate 1-decarboxylase | IZT61_11575 | A6L8I7 | Negative | 2849195 - 2849545 | 12799.6 |
| pantoate--beta-alanine ligase | IZT61_11580 | Q7MWV8 | Negative | 2849725 - 2850570 | 31301.9 |
| glycogen/starch synthase | IZT61_11585 | Q3B6C3 | Positive | 2850720 - 2851544 | 31322.5 |
| duf4270 domain-containing protein | IZT61_11590 | Not Available | Positive | 2851566 - 2852981 | 50945.6 |
| hypothetical protein | IZT61_11595 | Not Available | Negative | 2853610 - 2854746 | 43395.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

