Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna helicase recg | IZT61_11500 | Q55681 | Negative | 2828815 - 2830920 | 79808.7 |
| eama family transporter | IZT61_11505 | Q9I633 | Negative | 2830926 - 2831828 | 33874.2 |
| rida family protein | IZT61_11510 | O58584 | Negative | 2831831 - 2832211 | 13575.3 |
| ompa family protein | IZT61_11515 | P22263 | Negative | 2832458 - 2833801 | 47558.6 |
| aminopeptidase p family protein | IZT61_11520 | P15034 | Positive | 2833974 - 2835263 | 49251.4 |
| methylmalonyl co-a mutase-associated gtpase meab | IZT61_11525 | O58012 | Negative | 2835577 - 2836470 | 32288.3 |
| abc transporter atp-binding protein | IZT61_11530 | Q2LVL0 | Positive | 2836719 - 2838551 | 67965.8 |
| udp-galactopyranose mutase | IZT61_11535 | P37747 | Positive | 2839457 - 2840587 | 44108.1 |
| translation initiation factor if-2 | IZT61_11540 | Q11PK5 | Negative | 2840663 - 2843653 | 107747.0 |
| transcription termination/antitermination protein nusa | IZT61_11545 | P48514 | Negative | 2843711 - 2844955 | 47034.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

