Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosome-binding factor rbfa | IZT61_11450 | Q11P01 | Negative | 2818562 - 2818939 | 14307.9 |
| gtpase hflx | IZT61_11455 | A6H294 | Negative | 2819041 - 2820231 | 45030.2 |
| indole-3-glycerol phosphate synthase trpc | IZT61_11460 | Q8AAD6 | Negative | 2820824 - 2821606 | 28622.3 |
| aminodeoxychorismate/anthranilate synthase component ii | IZT61_11465 | P28819 | Negative | 2821631 - 2822239 | 22584.1 |
| anthranilate synthase component i family protein | IZT61_11470 | Q5F8B4 | Negative | 2822267 - 2823664 | 53181.9 |
| helix-turn-helix transcriptional regulator | IZT61_11475 | Not Available | Positive | 2824224 - 2824436 | 8298.18 |
| cytochrome b | IZT61_11480 | Not Available | Negative | 2824433 - 2824876 | 16248.6 |
| abc transporter atp-binding protein | IZT61_11485 | P45861 | Positive | 2825112 - 2826863 | 65157.7 |
| pldc n-terminal domain-containing protein | IZT61_11490 | Not Available | Positive | 2826879 - 2827094 | 8036.36 |
| mfs transporter | IZT61_11495 | B7MRM9 | Negative | 2827344 - 2828639 | 47423.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

