Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_01110 | Not Available | Positive | 250248 - 250835 | 21882.5 |
| abc transporter substrate-binding protein | IZT61_01115 | O34805 | Positive | 251233 - 252174 | 34909.3 |
| nad-dependent deacylase | IZT61_01120 | Q8A3H9 | Positive | 252184 - 252870 | 25279.3 |
| adenine nucleotide alpha hydrolase | IZT61_01125 | Q57990 | Positive | 252860 - 253585 | 27270.7 |
| hypothetical protein | IZT61_01130 | Not Available | Positive | 253769 - 254272 | 17156.3 |
| methyltransferase domain-containing protein | IZT61_01135 | Q9L9E7 | Negative | 255638 - 256894 | 48044.1 |
| nad(p)-dependent oxidoreductase | IZT61_01140 | A4FK61 | Negative | 256902 - 258218 | 47458.4 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | IZT61_01145 | P26394 | Negative | 258251 - 258796 | 20867.4 |
| sdr family oxidoreductase | IZT61_01150 | Q0P8I7 | Negative | 258805 - 259893 | 40010.8 |
| glucose-1-phosphate cytidylyltransferase | IZT61_01155 | Q8Z5I4 | Negative | 259928 - 260755 | 31173.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

