Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxymuconolactone decarboxylase family protein | IZT61_11350 | P08304 | Positive | 2800091 - 2800444 | 13328.0 |
| four helix bundle protein | IZT61_11355 | Not Available | Positive | 2800568 - 2800942 | 14454.4 |
| dna-3-methyladenine glycosylase i | IZT61_11360 | Q7VG78 | Positive | 2800952 - 2801584 | 24097.9 |
| gnat family n-acetyltransferase | IZT61_11365 | O34569 | Positive | 2801584 - 2802141 | 21343.6 |
| hypothetical protein | IZT61_11370 | Not Available | Negative | 2802271 - 2802951 | 24639.7 |
| hypothetical protein | IZT61_11375 | Not Available | Negative | 2802998 - 2803768 | 28220.2 |
| dna polymerase i | IZT61_11380 | Q9F173 | Positive | 2803923 - 2806733 | 104352.0 |
| tonb family protein | IZT61_11385 | Not Available | Positive | 2807120 - 2808016 | 33933.6 |
| hypothetical protein | IZT61_11390 | Not Available | Positive | 2808354 - 2808698 | 11899.5 |
| metal-dependent hydrolase | IZT61_11395 | A5FG55 | Negative | 2809411 - 2810088 | 24879.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

