Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_11300 | Not Available | Positive | 2792066 - 2792239 | 6690.1 |
| pa2169 family four-helix-bundle protein | IZT61_11305 | Not Available | Negative | 2792447 - 2792902 | 17059.0 |
| hypothetical protein | IZT61_11310 | Not Available | Positive | 2793106 - 2793795 | 26081.6 |
| thua domain-containing protein | IZT61_11315 | Not Available | Negative | 2793940 - 2794707 | 28946.3 |
| low molecular weight phosphotyrosine protein phosphatase | IZT61_11320 | Q55535 | Negative | 2794768 - 2795202 | 16233.5 |
| hydrogen peroxide-inducible genes activator | IZT61_11325 | P44418 | Negative | 2795199 - 2796131 | 35015.0 |
| gdp-l-fucose synthase | IZT61_11330 | Q9LMU0 | Negative | 2797655 - 2798581 | 34698.5 |
| trna (guanosine(46)-n7)-methyltransferase trmb | IZT61_11335 | Q8A0X7 | Positive | 2798698 - 2799348 | 25001.8 |
| mgmt family protein | IZT61_11340 | Q9UTN9 | Positive | 2799352 - 2799681 | 12045.6 |
| hypothetical protein | IZT61_11345 | Not Available | Negative | 2799678 - 2800034 | 13369.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

