Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zn-dependent hydrolase | IZT61_11050 | Q8L831 | Negative | 2732176 - 2733855 | 62714.1 |
| n-acetylmuramoyl-l-alanine amidase | IZT61_11055 | P75820 | Positive | 2733968 - 2734804 | 31126.2 |
| energy transducer tonb | IZT61_11060 | O25899 | Positive | 2734975 - 2735367 | 14363.9 |
| hypothetical protein | IZT61_11065 | Not Available | Negative | 2735724 - 2735909 | 6750.68 |
| capa family protein | IZT61_11070 | P19579 | Negative | 2735951 - 2737048 | 40093.2 |
| c40 family peptidase | IZT61_11075 | P45296 | Negative | 2737165 - 2737722 | 21077.1 |
| pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alpha | IZT61_11080 | Q4UKQ6 | Positive | 2738425 - 2739420 | 37047.3 |
| 2-oxo acid dehydrogenase subunit e2 | IZT61_11085 | O59816 | Positive | 2739451 - 2741121 | 58433.8 |
| duf1501 domain-containing protein | IZT61_11090 | Not Available | Negative | 2742539 - 2743738 | 45053.5 |
| duf1800 domain-containing protein | IZT61_11095 | Not Available | Negative | 2743827 - 2745269 | 54922.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

