Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | IZT61_10500 | O31648 | Positive | 2616840 - 2617346 | 19278.0 |
| pedo-3 family subclass b1 metallo-beta-lactamase | IZT61_10505 | Q9KJA7 | Positive | 2617424 - 2618137 | 26528.7 |
| gnat family n-acetyltransferase | IZT61_10510 | O31513 | Negative | 2618179 - 2618688 | 19768.7 |
| ribosome biogenesis gtpase der | IZT61_10515 | A0M5P1 | Negative | 2619137 - 2620438 | 48967.2 |
| tlpa family protein disulfide reductase | IZT61_10520 | O31820 | Negative | 2620593 - 2621099 | 18970.2 |
| gtpase era | IZT61_10525 | B3ETC6 | Negative | 2621111 - 2622007 | 34061.1 |
| Trna-met | Not Available | Not Available | Positive | 2622121 - 2622193 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 2622282 - 2622353 | Not Available |
| mechanosensitive ion channel | IZT61_10540 | P77338 | Negative | 2622477 - 2624828 | 87906.6 |
| hypothetical protein | IZT61_10545 | Not Available | Positive | 2625195 - 2626043 | 30901.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

