Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| giy-yig nuclease family protein | IZT61_10350 | Q2LS66 | Negative | 2582813 - 2583112 | 11551.8 |
| g-d-s-l family lipolytic protein | IZT61_10355 | Q09LX1 | Negative | 2583194 - 2583853 | 24185.4 |
| serine hydrolase | IZT61_10360 | Q2FVH6 | Negative | 2583869 - 2585422 | 57129.3 |
| putative toxin-antitoxin system toxin component, pin family | IZT61_10365 | Q59074 | Negative | 2585425 - 2585841 | 15600.0 |
| hypothetical protein | IZT61_10370 | Not Available | Negative | 2585828 - 2586046 | 8106.84 |
| hypothetical protein | IZT61_10375 | Not Available | Negative | 2586108 - 2587049 | 36890.3 |
| amidohydrolase | IZT61_10380 | Q8H3C9 | Negative | 2587357 - 2588541 | 43278.9 |
| spor domain-containing protein | IZT61_10385 | Not Available | Negative | 2588528 - 2588971 | 17214.8 |
| hypothetical protein | IZT61_10390 | Not Available | Negative | 2589319 - 2589522 | 7691.28 |
| pega domain-containing protein | IZT61_10395 | Not Available | Negative | 2589733 - 2590062 | 11952.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

