Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | IZT61_10250 | P74038 | Negative | 2564100 - 2564813 | 26507.1 |
| serine--trna ligase | IZT61_10255 | Q2S1G4 | Positive | 2564920 - 2566191 | 47649.8 |
| soca family protein | IZT61_10260 | Not Available | Positive | 2566397 - 2566957 | 20798.5 |
| hypothetical protein | IZT61_10265 | Not Available | Positive | 2566957 - 2567412 | 17262.8 |
| hypothetical protein | IZT61_10270 | Not Available | Negative | 2567547 - 2567861 | 11572.5 |
| simpl domain-containing protein | IZT61_10275 | Not Available | Negative | 2567960 - 2568646 | 25375.8 |
| hypothetical protein | IZT61_10280 | Not Available | Negative | 2568910 - 2569149 | 8827.69 |
| cold shock domain-containing protein | IZT61_10285 | P0C0F1 | Negative | 2569759 - 2570211 | 16885.1 |
| gnat family n-acetyltransferase | IZT61_10290 | Q7VG78 | Negative | 2570350 - 2570886 | 20551.4 |
| trans-2-enoyl-coa reductase family protein | IZT61_10295 | A5FE91 | Negative | 2570994 - 2572184 | 42875.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

