Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramate dehydrogenase | IZT61_10100 | A5FNG4 | Negative | 2530785 - 2531801 | 36459.5 |
| hypothetical protein | IZT61_10105 | Not Available | Negative | 2532277 - 2532723 | 16803.1 |
| sterol desaturase family protein | IZT61_10110 | P21688 | Negative | 2533014 - 2533442 | 17015.1 |
| tetr/acrr family transcriptional regulator | IZT61_10115 | Q9RQQ0 | Positive | 2533613 - 2534218 | 23442.6 |
| tolc family protein | IZT61_10120 | Q9K2Y1 | Positive | 2534443 - 2535783 | 49693.5 |
| efflux rnd transporter periplasmic adaptor subunit | IZT61_10125 | Q57500 | Positive | 2535786 - 2536853 | 38317.9 |
| efflux rnd transporter permease subunit | IZT61_10130 | P25197 | Positive | 2536938 - 2540132 | 116001.0 |
| hypothetical protein | IZT61_10135 | Not Available | Positive | 2540291 - 2541094 | 30250.0 |
| hypothetical protein | IZT61_10140 | Not Available | Positive | 2541116 - 2541355 | 9353.78 |
| type ii toxin-antitoxin system rele/pare family toxin | IZT61_10145 | Not Available | Positive | 2541355 - 2541648 | 11900.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

