Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fasciclin domain-containing protein | IZT61_10000 | Q9FGY9 | Negative | 2504654 - 2505763 | 41192.9 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_10005 | T2KPM5 | Negative | 2505914 - 2507323 | 53325.8 |
| susc/raga family tonb-linked outer membrane protein | IZT61_10010 | T2KPJ3 | Negative | 2507457 - 2510471 | 113298.0 |
| sulp family inorganic anion transporter | IZT61_10015 | P55189 | Negative | 2511355 - 2512890 | 55283.2 |
| duf4981 domain-containing protein | IZT61_10020 | Q56307 | Positive | 2513614 - 2516775 | 120942.0 |
| duf808 domain-containing protein | IZT61_10025 | P46125 | Negative | 2517850 - 2518719 | 31153.2 |
| gnat family n-acetyltransferase | IZT61_10030 | Not Available | Positive | 2518846 - 2519346 | 18322.1 |
| pas domain-containing protein | IZT61_10035 | P9WLZ6 | Negative | 2519394 - 2520278 | 32943.6 |
| helix-turn-helix transcriptional regulator | IZT61_10040 | P28808 | Negative | 2520576 - 2521409 | 31345.3 |
| aldo/keto reductase | IZT61_10045 | A2XRZ0 | Negative | 2521410 - 2522381 | 35248.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

