Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iv | IZT61_09950 | Q18A91 | Positive | 2487932 - 2489032 | 40591.8 |
| duf4965 domain-containing protein | IZT61_09955 | Q2U4L7 | Negative | 2489326 - 2491794 | 92007.1 |
| discoidin domain-containing protein | IZT61_09960 | B9J3S4 | Negative | 2492348 - 2493181 | 31211.2 |
| hypothetical protein | IZT61_09965 | A3DC75 | Negative | 2493206 - 2494645 | 51818.5 |
| duf4983 domain-containing protein | IZT61_09970 | Not Available | Negative | 2494673 - 2496376 | 63166.5 |
| duf5008 domain-containing protein | IZT61_09975 | Not Available | Negative | 2496411 - 2498030 | 58779.8 |
| hypothetical protein | IZT61_09980 | Not Available | Negative | 2498057 - 2498791 | 27688.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_09985 | T2KPM5 | Negative | 2498814 - 2500346 | 58023.6 |
| susc/raga family tonb-linked outer membrane protein | IZT61_09990 | T2KPJ3 | Negative | 2500358 - 2503507 | 116614.0 |
| duf5007 domain-containing protein | IZT61_09995 | Not Available | Negative | 2503529 - 2504617 | 40860.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

