Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-amylase family protein | IZT61_09900 | P14899 | Negative | 2471308 - 2473185 | 70444.7 |
| glycoside hydrolase family 65 protein | IZT61_09905 | E6ENP7 | Negative | 2473788 - 2476133 | 89679.7 |
| beta-phosphoglucomutase | IZT61_09910 | O06995 | Negative | 2476207 - 2476896 | 25048.2 |
| hypothetical protein | IZT61_09915 | Not Available | Negative | 2476947 - 2477321 | 12927.2 |
| glycoside hydrolase family 13 protein | IZT61_09920 | Q8A1G0 | Negative | 2477556 - 2479475 | 72794.6 |
| suse domain-containing protein | IZT61_09925 | Not Available | Negative | 2479540 - 2480556 | 35678.4 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_09930 | Q8A1G2 | Negative | 2480576 - 2482171 | 58219.7 |
| tonb-dependent receptor | IZT61_09935 | Q8A1G1 | Negative | 2482210 - 2485170 | 107081.0 |
| laci family dna-binding transcriptional regulator | IZT61_09940 | Q9K6K2 | Negative | 2485597 - 2486616 | 38065.1 |
| response regulator transcription factor | IZT61_09945 | Q55890 | Positive | 2486960 - 2487319 | 13345.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

