Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydrolase | IZT61_09805 | P77619 | Negative | 2441612 - 2443426 | 67132.8 |
| amidohydrolase | IZT61_09810 | O34355 | Negative | 2443413 - 2445047 | 60797.7 |
| aminoacyl-trna hydrolase | IZT61_09815 | Q11RT7 | Negative | 2445320 - 2445880 | 20540.0 |
| 50s ribosomal protein l25/general stress protein ctc | IZT61_09820 | B3ERN9 | Negative | 2446087 - 2446671 | 21523.4 |
| ribose-phosphate pyrophosphokinase | IZT61_09825 | Q7MT83 | Negative | 2446754 - 2447695 | 34070.2 |
| Trna-gln | Not Available | Not Available | Positive | 2447763 - 2447836 | Not Available |
| duf2723 domain-containing protein | IZT61_09830 | Q9NX78 | Positive | 2448029 - 2451055 | 114739.0 |
| duf2723 domain-containing protein | IZT61_09835 | Q8MXQ3 | Positive | 2451497 - 2454529 | 113646.0 |
| transposase | IZT61_09840 | Not Available | Positive | 2454866 - 2455420 | 21644.9 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | IZT61_09845 | A5FNY7 | Negative | 2455993 - 2456955 | 35882.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

