Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_09705 | Not Available | Positive | 2420137 - 2420757 | 23191.9 |
| hypothetical protein | IZT61_09710 | Not Available | Negative | 2421175 - 2421738 | 21177.4 |
| dmt family transporter | IZT61_09715 | P42243 | Negative | 2421843 - 2422736 | 31936.8 |
| pyridoxine 5'-phosphate synthase | IZT61_09720 | Q11PM4 | Negative | 2422892 - 2423608 | 26581.5 |
| hypothetical protein | IZT61_09725 | Not Available | Negative | 2423863 - 2424153 | 10522.7 |
| lactonase family protein | IZT61_09730 | O34499 | Positive | 2424395 - 2425507 | 39943.4 |
| srpbcc domain-containing protein | IZT61_09735 | Not Available | Positive | 2425513 - 2426007 | 19152.6 |
| phytanoyl-coa dioxygenase family protein | IZT61_09740 | Not Available | Positive | 2426007 - 2426726 | 27389.7 |
| ktsc domain-containing protein | IZT61_09745 | Q601X8 | Negative | 2426952 - 2427398 | 17254.6 |
| beta-galactosidase | IZT61_09750 | P48982 | Negative | 2427595 - 2429469 | 69645.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

