Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m28 family peptidase | IZT61_09655 | Q9CYK2 | Negative | 2409304 - 2410281 | 36005.2 |
| cysteine--trna ligase | IZT61_09660 | A5FHM5 | Negative | 2410680 - 2412140 | 54933.6 |
| mbl fold metallo-hydrolase | IZT61_09665 | O34760 | Positive | 2412385 - 2413152 | 29022.0 |
| ycei family protein | IZT61_09670 | Q12MB6 | Negative | 2413432 - 2414019 | 20409.7 |
| duf2384 domain-containing protein | IZT61_09675 | Not Available | Positive | 2414255 - 2414695 | 16743.0 |
| res family nad+ phosphorylase | IZT61_09680 | A1JNH0 | Positive | 2414698 - 2415150 | 17340.8 |
| glyoxalase | IZT61_09685 | Not Available | Positive | 2415174 - 2415536 | 14113.5 |
| aminomethyl-transferring glycine dehydrogenase | IZT61_09690 | B2J427 | Negative | 2416231 - 2419107 | 104699.0 |
| duf4282 domain-containing protein | IZT61_09695 | Not Available | Positive | 2419561 - 2419833 | 10186.9 |
| duf4878 domain-containing protein | IZT61_09700 | Not Available | Positive | 2419830 - 2420174 | 12744.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

