Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate:quinone oxidoreductase | IZT61_09605 | A5FGX2 | Negative | 2399863 - 2401380 | 56253.8 |
| peptide-methionine (s)-s-oxide reductase msra | IZT61_09610 | Q97Y45 | Negative | 2401598 - 2402197 | 22632.1 |
| isopenicillin n synthase family oxygenase | IZT61_09615 | A0A411L030 | Positive | 2402466 - 2403428 | 35984.6 |
| crp/fnr family transcriptional regulator | IZT61_09620 | O05689 | Positive | 2403625 - 2404218 | 23199.8 |
| sterol desaturase family protein | IZT61_09625 | Q6ZNB7 | Positive | 2404288 - 2405007 | 28370.4 |
| dinb family protein | IZT61_09630 | Not Available | Positive | 2405363 - 2405845 | 18518.1 |
| tetratricopeptide repeat protein | IZT61_09635 | Not Available | Positive | 2406085 - 2406606 | 20481.3 |
| hypothetical protein | IZT61_09640 | Not Available | Positive | 2406896 - 2407084 | 7004.28 |
| glycerophosphodiester phosphodiesterase | IZT61_09645 | O07592 | Negative | 2407185 - 2408069 | 33437.1 |
| nuclear transport factor 2 family protein | IZT61_09650 | Not Available | Negative | 2408360 - 2409223 | 31518.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

