Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pseudouridine synthase | IZT61_09555 | O67444 | Positive | 2384812 - 2386227 | 54125.5 |
| tlpa family protein disulfide reductase | IZT61_09560 | Q73B22 | Negative | 2386410 - 2386925 | 19344.6 |
| hypothetical protein | IZT61_09565 | Not Available | Negative | 2387006 - 2388526 | 57481.3 |
| duf4843 domain-containing protein | IZT61_09570 | Not Available | Negative | 2388556 - 2389305 | 28740.5 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_09575 | T2KNB8 | Negative | 2389323 - 2390759 | 53747.4 |
| susc/raga family tonb-linked outer membrane protein | IZT61_09580 | T2KMI3 | Negative | 2390794 - 2394135 | 123444.0 |
| fecr domain-containing protein | IZT61_09585 | Not Available | Negative | 2394288 - 2395475 | 43918.2 |
| rna polymerase sigma-70 factor | IZT61_09590 | H8F2P4 | Negative | 2395536 - 2396156 | 23465.0 |
| adenosylhomocysteinase | IZT61_09595 | A5FJK3 | Negative | 2396467 - 2397783 | 48400.9 |
| acyltransferase | IZT61_09600 | P29113 | Negative | 2397973 - 2399079 | 41630.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

