Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i asparaginase | IZT61_09505 | P0A963 | Negative | 2374025 - 2375044 | 37587.2 |
| tatd family hydrolase | IZT61_09510 | P37545 | Negative | 2375519 - 2376286 | 28813.5 |
| excinuclease abc subunit uvra | IZT61_09515 | O34863 | Negative | 2376773 - 2379745 | 110573.0 |
| hypothetical protein | IZT61_09520 | Not Available | Negative | 2379857 - 2380816 | 36832.6 |
| glyoxalase/bleomycin resistance/extradiol dioxygenase family protein | IZT61_09525 | Not Available | Positive | 2380964 - 2381368 | 15107.1 |
| hypothetical protein | IZT61_09530 | Not Available | Positive | 2381552 - 2381791 | 9129.04 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | IZT61_09535 | P69347 | Positive | 2381938 - 2382192 | 9645.59 |
| txe/yoeb family addiction module toxin | IZT61_09540 | P69348 | Positive | 2382194 - 2382451 | 10549.5 |
| ferredoxin--nadp reductase | IZT61_09545 | B6V6V6 | Negative | 2382471 - 2383514 | 39874.9 |
| lytic transglycosylase domain-containing protein | IZT61_09550 | P0AEZ8 | Negative | 2383766 - 2384548 | 29577.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

