Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m1 family metallopeptidase | IZT61_09405 | Q6Z6L4 | Negative | 2346648 - 2348624 | 73813.4 |
| carboxypeptidase-like regulatory domain-containing protein | IZT61_09410 | Not Available | Negative | 2349093 - 2349833 | 28254.2 |
| spx/mgsr family rna polymerase-binding regulatory protein | IZT61_09415 | P24178 | Negative | 2349901 - 2350248 | 13150.7 |
| helix-turn-helix transcriptional regulator | IZT61_09420 | Not Available | Negative | 2350383 - 2350775 | 14894.9 |
| type ii toxin-antitoxin system hica family toxin | IZT61_09425 | Q3KJK8 | Negative | 2350780 - 2350968 | 6997.74 |
| histidine kinase | IZT61_09430 | P94586 | Positive | 2351459 - 2352784 | 50840.9 |
| giy-yig nuclease family protein | IZT61_09435 | Q49UZ7 | Positive | 2353403 - 2353750 | 13928.3 |
| response regulator transcription factor | IZT61_09440 | P0AE40 | Positive | 2353900 - 2354574 | 25529.9 |
| carboxypeptidase-like regulatory domain-containing protein | IZT61_09445 | T2KMI3 | Negative | 2354577 - 2360882 | 238559.0 |
| 6,7-dimethyl-8-ribityllumazine synthase | IZT61_09450 | Q11NR0 | Positive | 2361041 - 2361532 | 17225.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

