Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | IZT61_09305 | A7LXT5 | Positive | 2325763 - 2327367 | 60075.5 |
| duf3823 domain-containing protein | IZT61_09310 | Not Available | Positive | 2327557 - 2328252 | 25180.8 |
| sulfite exporter taue/safe family protein | IZT61_09315 | O32134 | Positive | 2328573 - 2329406 | 28806.4 |
| duf1634 domain-containing protein | IZT61_09320 | Not Available | Positive | 2329406 - 2329804 | 14570.3 |
| dntp triphosphohydrolase | IZT61_09325 | B7UXM6 | Negative | 2330029 - 2331372 | 50862.5 |
| hypothetical protein | IZT61_09330 | Not Available | Positive | 2331545 - 2331907 | 12701.0 |
| hypothetical protein | IZT61_09335 | Not Available | Negative | 2332014 - 2332256 | 9036.17 |
| response regulator transcription factor | IZT61_09340 | Q2YZ42 | Positive | 2332637 - 2333293 | 23839.2 |
| hypothetical protein | IZT61_09345 | Not Available | Negative | 2333297 - 2333626 | 12363.9 |
| 30s ribosomal protein s10 | IZT61_09350 | A0M599 | Negative | 2333643 - 2333948 | 11418.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

