Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1304 domain-containing protein | IZT61_09105 | Q02009 | Positive | 2292270 - 2292629 | 13253.8 |
| murein l,d-transpeptidase catalytic domain family protein | IZT61_09110 | Not Available | Positive | 2292648 - 2293223 | 21370.1 |
| sam-dependent methyltransferase | IZT61_09115 | Q8NEC7 | Negative | 2293325 - 2294527 | 45384.9 |
| gmc family oxidoreductase | IZT61_09120 | Q3YAT3 | Positive | 2294791 - 2296527 | 63712.4 |
| gluconate 2-dehydrogenase subunit 3 family protein | IZT61_09125 | Not Available | Positive | 2296529 - 2297164 | 23501.1 |
| hypothetical protein | IZT61_09130 | Not Available | Negative | 2297415 - 2300375 | 111746.0 |
| 50s ribosomal protein l17 | IZT61_09135 | A6LEG4 | Negative | 2301538 - 2302083 | 20090.9 |
| dna-directed rna polymerase subunit alpha | IZT61_09140 | A0M573 | Negative | 2302255 - 2303247 | 37106.9 |
| 30s ribosomal protein s4 | IZT61_09145 | Q8A4A1 | Negative | 2303333 - 2303941 | 22957.7 |
| 30s ribosomal protein s11 | IZT61_09150 | Q11QD6 | Negative | 2304002 - 2304391 | 13786.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

