Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | IZT61_09005 | Q8X4V6 | Positive | 2270181 - 2271308 | 40889.3 |
| hypothetical protein | IZT61_09010 | Not Available | Positive | 2271313 - 2271930 | 22953.4 |
| gnat family n-acetyltransferase | IZT61_09015 | O06744 | Positive | 2271934 - 2272374 | 17070.6 |
| m42 family metallopeptidase | IZT61_09020 | Q8TZW4 | Positive | 2272413 - 2273528 | 41663.6 |
| hypothetical protein | IZT61_09025 | Not Available | Positive | 2273700 - 2273960 | 9982.19 |
| exodeoxyribonuclease iii | IZT61_09030 | P09030 | Negative | 2274131 - 2274904 | 29620.2 |
| hypothetical protein | IZT61_09035 | Not Available | Positive | 2275578 - 2276075 | 19214.2 |
| response regulator | IZT61_09040 | Q55890 | Negative | 2276307 - 2276687 | 14161.1 |
| sigma-70 family rna polymerase sigma factor | IZT61_09045 | Q7AKG9 | Negative | 2276788 - 2277306 | 19984.9 |
| response regulator transcription factor | IZT61_09050 | Q2YZ42 | Negative | 2277430 - 2278080 | 24080.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

