Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_08855 | Not Available | Negative | 2227881 - 2230010 | 80246.4 |
| duf4965 domain-containing protein | IZT61_08860 | Q2U4L7 | Negative | 2230145 - 2232589 | 91552.9 |
| laci family dna-binding transcriptional regulator | IZT61_08865 | Q0I4B4 | Negative | 2233568 - 2234572 | 37684.4 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_08870 | Q8A1G2 | Negative | 2235027 - 2236697 | 62541.5 |
| susc/raga family tonb-linked outer membrane protein | IZT61_08875 | T2KPJ3 | Negative | 2236709 - 2239816 | 113039.0 |
| lipid-a-disaccharide synthase | IZT61_08880 | Q2LVL8 | Negative | 2240081 - 2241190 | 41361.8 |
| stationary phase survival protein sure | IZT61_08885 | Not Available | Negative | 2241357 - 2241629 | 9948.57 |
| 5'/3'-nucleotidase sure | IZT61_08890 | A6H213 | Negative | 2241643 - 2242485 | 30523.5 |
| insulinase family protein | IZT61_08895 | O25656 | Positive | 2242884 - 2245817 | 109781.0 |
| hypothetical protein | IZT61_08900 | Not Available | Negative | 2246194 - 2247909 | 63862.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

