Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose-5-phosphate isomerase rpia | IZT61_08805 | Q1GX07 | Negative | 2211061 - 2211750 | 24313.5 |
| tonb-dependent receptor | IZT61_08810 | P46359 | Negative | 2212609 - 2214957 | 86104.0 |
| c-type cytochrome | IZT61_08815 | P15452 | Negative | 2215327 - 2217285 | 72742.1 |
| duf1080 domain-containing protein | IZT61_08820 | Not Available | Negative | 2217296 - 2218705 | 50769.1 |
| gh92 family glycosyl hydrolase | IZT61_08825 | O86365 | Negative | 2219178 - 2221466 | 85942.6 |
| alpha-l-fucosidase | IZT61_08830 | Q8GW72 | Negative | 2221501 - 2222907 | 53784.2 |
| secretory protein | IZT61_08835 | Not Available | Negative | 2222914 - 2223579 | 25076.9 |
| secretory protein | IZT61_08840 | Not Available | Negative | 2223581 - 2224555 | 36717.4 |
| rok family protein | IZT61_08845 | Q9X1I0 | Negative | 2224656 - 2225528 | 31680.9 |
| gh92 family glycosyl hydrolase | IZT61_08850 | O86365 | Negative | 2225569 - 2227863 | 86688.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

