Pedobacter endophyticus JBR3-12

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter endophyticus JBR3-12 is a bacterial species characterized by its motility, attributed to the presence of flagella. This trait enables the organism to navigate its environment, potentially enhancing its interactions with other microorganisms and host plants. The genome of P. endophyticus JBR3-12 consists of a single replicon, which may indicate a streamlined genomic organization conducive to its ecological niche. This bacterium is cataloged under the accession number CP064939.1, which provides a reference for its genetic sequence and facilitates further research into its biological functions and capabilities. The presence of a singular replicon can suggest a stable genomic structure that might be advantageous in specific environmental conditions. Overall, the characteristics of Pedobacter endophyticus JBR3-12, particularly its motility and genomic organization, may play a significant role in its ecological interactions, including its potential as an endophyte. As an endophytic bacterium, it may contribute to plant health by promoting growth or providing protection against pathogens. These traits suggest that P. endophyticus JBR3-12 could be an important player in the microbiome of its host, potentially influencing nutrient cycling and plant resilience in its ecological context.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter endophyticus
StrainJBR3-12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter endophyticus JBR3-12, Complete Genome

Gene Summary

Adenine Count

1588031 bp

Thymine Count

1595629 bp

Guanine Count

1118331 bp

Cytosine Count

1124079 bp

Genome Length

5426070 bp

Protein-coding Genes

4366 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cation:proton antiporterIZT61_08755P39830Positive2200190 - 220240381654.2
duf2157 domain-containing proteinIZT61_08760Not AvailablePositive2202584 - 220361839778.6
yjbq family proteinIZT61_08765P0A2L2Positive2203926 - 220434816004.0
yihy/virulence factor brkb family proteinIZT61_08770A1REM8Negative2204485 - 220546235603.8
alpha/beta fold hydrolaseIZT61_08775Q9WYH1Negative2205614 - 220693348091.0
doxx family proteinIZT61_08780Not AvailableNegative2207014 - 220739114063.9
voc family proteinIZT61_08785P16681Negative2207523 - 220793314968.0
transcriptional regulatorIZT61_08790Not AvailableNegative2207939 - 220834315261.2
helix-turn-helix domain-containing proteinIZT61_08795A0A0H2ZIC3Positive2208462 - 220944836987.8
hypothetical proteinIZT61_08800Not AvailableNegative2210491 - 221087414093.4

Displaying genes 1751 – 1760 of 4428 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.