Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent methyltransferase | IZT61_08405 | B7GHW9 | Negative | 2117235 - 2117921 | 26611.1 |
| type ix secretion system outer membrane channel protein porv | IZT61_08410 | Not Available | Positive | 2118198 - 2119388 | 42892.3 |
| doxx family protein | IZT61_08415 | Not Available | Positive | 2119456 - 2119896 | 16488.7 |
| Trna-ser | Not Available | Not Available | Positive | 2120022 - 2120109 | Not Available |
| hypothetical protein | IZT61_08425 | Not Available | Positive | 2120322 - 2120756 | 16744.1 |
| cold shock domain-containing protein | IZT61_08430 | Not Available | Positive | 2120888 - 2121136 | 8978.79 |
| pas domain-containing sensor histidine kinase | IZT61_08435 | Q45614 | Positive | 2121406 - 2122473 | 40774.3 |
| pas domain-containing protein | IZT61_08440 | Q02998 | Positive | 2122890 - 2125841 | 112477.0 |
| pas domain s-box protein | IZT61_08445 | Q1M799 | Positive | 2125843 - 2127444 | 60342.1 |
| chemotaxis protein cheb | IZT61_08450 | P62642 | Positive | 2127451 - 2128455 | 37085.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

