Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter riviphilus SW-16
Accession NumberCP061171.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lipid a deacylase lpxr family protein | H9N25_00055 | Not Available | - | 8592 - 9548 | 35779.5 |
| 16s ribosomal rna | Not Available | Not Available | + | 10612 - 12128 | Not Available |
| Trna-ile | Not Available | Not Available | + | 12317 - 12390 | Not Available |
| Trna-ala | Not Available | Not Available | + | 12473 - 12546 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | + | 12947 - 15820 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | + | 15967 - 16078 | Not Available |
| s8 family peptidase | H9N25_00085 | Q45670 | + | 16445 - 18214 | 65857.9 |
| polysaccharide deacetylase family protein | H9N25_00090 | Q04729 | - | 18239 - 19021 | 30661.8 |
| glycosyltransferase family 2 protein | H9N25_00095 | O34319 | - | 19023 - 19955 | 35359.9 |
| duf2029 domain-containing protein | H9N25_00100 | Not Available | - | 19948 - 21135 | 45122.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.