Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_04905 | O33945 | Positive | 1180466 - 1181333 | 31666.2 |
| hypothetical protein | H9N25_04910 | Not Available | Negative | 1181482 - 1181910 | 15065.0 |
| crp/fnr family transcriptional regulator | H9N25_04915 | Not Available | Positive | 1182093 - 1182617 | 20299.9 |
| duf4345 domain-containing protein | H9N25_04920 | Not Available | Positive | 1182668 - 1183093 | 15782.7 |
| hypothetical protein | H9N25_04925 | Not Available | Positive | 1183170 - 1183502 | 13195.8 |
| helix-turn-helix transcriptional regulator | H9N25_04930 | Q51872 | Positive | 1183520 - 1184080 | 21385.0 |
| alpha/beta hydrolase | H9N25_04935 | D5EV35 | Positive | 1184154 - 1185062 | 33480.6 |
| transmembrane 220 family protein | H9N25_04940 | Not Available | Positive | 1185273 - 1185653 | 14259.7 |
| eboa domain-containing protein | H9N25_04945 | Not Available | Positive | 1185674 - 1186531 | 32382.8 |
| tatd family hydrolase | H9N25_04950 | Q58778 | Positive | 1186558 - 1187544 | 36744.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

