Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | H9N25_04855 | P17410 | Positive | 1171381 - 1172247 | 34140.0 |
| hypothetical protein | H9N25_04860 | Not Available | Positive | 1172318 - 1173373 | 38519.2 |
| arac family transcriptional regulator | H9N25_04865 | O34901 | Positive | 1173631 - 1174800 | 44854.9 |
| hypothetical protein | H9N25_04870 | Not Available | Positive | 1175263 - 1175751 | 17576.8 |
| hypothetical protein | H9N25_04875 | Not Available | Positive | 1175995 - 1176759 | 27984.4 |
| hypothetical protein | H9N25_04880 | Not Available | Positive | 1176801 - 1177127 | 12820.8 |
| nad-dependent epimerase/dehydratase family protein | H9N25_04885 | P73212 | Negative | 1177155 - 1178165 | 37270.6 |
| crp/fnr family transcriptional regulator | H9N25_04890 | Q5SID7 | Negative | 1178230 - 1178805 | 22262.8 |
| dmt family transporter | H9N25_04895 | O29470 | Negative | 1178946 - 1179848 | 33442.2 |
| gnat family n-acetyltransferase | H9N25_04900 | P21340 | Negative | 1179848 - 1180393 | 21142.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

