Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_04805 | Not Available | Positive | 1153982 - 1155661 | 59908.9 |
| t9ss type a sorting domain-containing protein | H9N25_04810 | Not Available | Positive | 1155727 - 1157655 | 69765.2 |
| hypothetical protein | H9N25_04815 | Not Available | Positive | 1157656 - 1158363 | 25882.7 |
| serine hydrolase | H9N25_04820 | Q6G6M9 | Negative | 1158992 - 1160554 | 58359.4 |
| arac family transcriptional regulator | H9N25_04825 | Not Available | Negative | 1160671 - 1161480 | 31791.4 |
| rna polymerase sigma-70 factor | H9N25_04830 | Q45585 | Positive | 1162125 - 1162685 | 21243.8 |
| fecr domain-containing protein | H9N25_04835 | Not Available | Positive | 1162753 - 1163916 | 42856.6 |
| doxx family membrane protein | H9N25_04840 | T2KMI3 | Positive | 1164157 - 1167516 | 125387.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_04845 | T2KN63 | Positive | 1167534 - 1169408 | 69354.4 |
| doxx family membrane protein | H9N25_04850 | Q8GW72 | Positive | 1169548 - 1171043 | 55136.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

