Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase/3'-5' exonuclease polx | H9N25_04705 | P94544 | Negative | 1132065 - 1133741 | 62769.6 |
| hypothetical protein | H9N25_04710 | Not Available | Positive | 1133831 - 1134460 | 23033.5 |
| signal peptide peptidase sppa | H9N25_04715 | P73689 | Negative | 1134540 - 1136306 | 64902.1 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | H9N25_04720 | Q8P151 | Positive | 1136347 - 1136853 | 18876.3 |
| cdp-diacylglycerol--serine o-phosphatidyltransferase | H9N25_04725 | P39823 | Negative | 1137097 - 1137792 | 25587.9 |
| transcription termination factor rho | H9N25_04730 | O83281 | Negative | 1137858 - 1139588 | 64154.3 |
| orotidine-5'-phosphate decarboxylase | H9N25_04735 | Q8A012 | Positive | 1140015 - 1140845 | 30840.9 |
| hypothetical protein | H9N25_04740 | Not Available | Positive | 1141184 - 1141438 | 9599.49 |
| hypothetical protein | H9N25_04745 | Not Available | Positive | 1141486 - 1141752 | 10675.7 |
| duf2851 family protein | H9N25_04750 | Not Available | Positive | 1141790 - 1143073 | 49353.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

