Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_04655 | Not Available | Positive | 1122405 - 1122746 | 12731.4 |
| hypothetical protein | H9N25_04660 | O04073 | Positive | 1122973 - 1123911 | 34361.8 |
| hypothetical protein | H9N25_04665 | Not Available | Positive | 1124059 - 1124325 | 10178.2 |
| dna-protecting protein dpra | H9N25_04670 | P73345 | Positive | 1124377 - 1125471 | 40116.1 |
| pyridoxal-phosphate dependent enzyme | H9N25_04675 | P9WP50 | Positive | 1125629 - 1126990 | 49631.5 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | H9N25_04680 | Q8A681 | Negative | 1127251 - 1128576 | 48144.9 |
| duf4290 domain-containing protein | H9N25_04685 | Not Available | Negative | 1128670 - 1129359 | 26753.6 |
| histidine phosphatase family protein | H9N25_04690 | Q94BY1 | Negative | 1129785 - 1130282 | 18614.0 |
| glycosyltransferase family 9 protein | H9N25_04695 | Q57336 | Negative | 1130275 - 1131306 | 38444.7 |
| duf4254 domain-containing protein | H9N25_04700 | Not Available | Negative | 1131341 - 1131943 | 23381.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

