Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trigger factor | H9N25_04555 | B3QXY8 | Positive | 1106253 - 1107608 | 51285.8 |
| four helix bundle protein | H9N25_04560 | Not Available | Positive | 1107654 - 1108031 | 14155.1 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | H9N25_04565 | Q64NW2 | Positive | 1108167 - 1108874 | 26102.4 |
| atp-dependent clp protease atp-binding subunit clpx | H9N25_04570 | Q8A128 | Positive | 1108858 - 1110096 | 46100.0 |
| amp nucleosidase | H9N25_04575 | P0AE13 | Positive | 1110191 - 1111054 | 31962.8 |
| rna polymerase sigma factor rpod/siga | H9N25_04580 | P33656 | Negative | 1111277 - 1112137 | 32636.0 |
| duf2975 domain-containing protein | H9N25_04585 | Not Available | Positive | 1112591 - 1113148 | 21083.6 |
| duf2975 domain-containing protein | H9N25_04590 | Not Available | Positive | 1113151 - 1113642 | 18794.3 |
| helix-turn-helix transcriptional regulator | H9N25_04595 | O31834 | Positive | 1113647 - 1113853 | 7576.53 |
| adp-forming succinate--coa ligase subunit beta | H9N25_04600 | A5FHX8 | Negative | 1115007 - 1116206 | 43150.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

