Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-rhamnose mutarotase | H9N25_04505 | Q8ESX3 | Negative | 1097679 - 1098128 | 16984.4 |
| alpha-l-fucosidase | H9N25_04510 | P49713 | Negative | 1098152 - 1099450 | 49489.6 |
| sodium/solute symporter | H9N25_04515 | P11170 | Negative | 1099458 - 1101110 | 60559.8 |
| mandelate racemase | H9N25_04520 | Q7L5Y1 | Negative | 1101129 - 1102349 | 45121.1 |
| sdr family oxidoreductase | H9N25_04525 | Q9MYP6 | Negative | 1102364 - 1103128 | 27294.9 |
| helix-turn-helix transcriptional regulator | H9N25_04530 | P96660 | Positive | 1103346 - 1104224 | 34023.0 |
| abc transporter substrate-binding protein | H9N25_04535 | O34805 | Positive | 1104312 - 1105115 | 30514.1 |
| hypothetical protein | H9N25_04540 | Not Available | Positive | 1105198 - 1105500 | 10866.4 |
| Trna-leu | Not Available | Not Available | Positive | 1105701 - 1105782 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 1105997 - 1106078 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

