Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | H9N25_04455 | Q04850 | Negative | 1079361 - 1080716 | 52022.6 |
| sigma-54-dependent fis family transcriptional regulator | H9N25_04460 | Q06065 | Negative | 1080784 - 1082154 | 51468.6 |
| hlyd family efflux transporter periplasmic adaptor subunit | H9N25_04465 | O31710 | Positive | 1082337 - 1083581 | 46292.4 |
| abc transporter atp-binding protein | H9N25_04470 | Q58903 | Positive | 1083696 - 1084394 | 26026.3 |
| abc transporter permease | H9N25_04475 | Q9JVR5 | Positive | 1084562 - 1086931 | 88365.2 |
| abc transporter permease | H9N25_04480 | Q9JVR5 | Positive | 1087005 - 1089377 | 88522.0 |
| abc transporter permease | H9N25_04485 | Q6MPX9 | Positive | 1089461 - 1091842 | 88343.3 |
| abc transporter permease | H9N25_04490 | Q7N6F9 | Positive | 1091917 - 1094292 | 88516.9 |
| abc transporter permease | H9N25_04495 | Q2EHL8 | Positive | 1094447 - 1096792 | 87724.4 |
| abc transporter atp-binding protein | H9N25_04500 | Q58206 | Positive | 1096872 - 1097552 | 25109.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

