Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoadenylyl-sulfate reductase | H9N25_04405 | Q8UH67 | Positive | 1065481 - 1066182 | 27177.1 |
| sulfate adenylyltransferase subunit cysd | H9N25_04410 | P65671 | Positive | 1066295 - 1067218 | 35122.6 |
| gtp-binding protein | H9N25_04415 | A1ST27 | Positive | 1067344 - 1068594 | 46326.2 |
| doxx family membrane protein | H9N25_04420 | Not Available | Positive | 1068858 - 1069867 | 36751.8 |
| hypothetical protein | H9N25_04425 | Not Available | Positive | 1069943 - 1070413 | 16975.6 |
| uroporphyrinogen-iii c-methyltransferase | H9N25_04430 | Q58375 | Positive | 1070999 - 1071793 | 28686.4 |
| doxx family membrane protein | H9N25_04435 | A5FG96 | Positive | 1072149 - 1073560 | 52089.4 |
| glucose-1-phosphate adenylyltransferase | H9N25_04440 | B8HM61 | Positive | 1073569 - 1074837 | 46866.9 |
| glycoside hydrolase family 15 protein | H9N25_04445 | Q978S7 | Positive | 1075112 - 1076896 | 68541.4 |
| bifunctional alpha,alpha-trehalose-phosphate synthase (udp-forming)/trehalose-phosphatase | H9N25_04450 | G4RK44 | Negative | 1077087 - 1079276 | 83815.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

