Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iuca/iucc family siderophore biosynthesis protein | H9N25_04355 | Q9Z3Q7 | Negative | 1048296 - 1050107 | 69170.4 |
| sida/iucd/pvda family monooxygenase | H9N25_04360 | Q44740 | Negative | 1050250 - 1051587 | 50708.6 |
| gnat family n-acetyltransferase | H9N25_04365 | A0A0F7RJ52 | Negative | 1051588 - 1054047 | 94617.8 |
| aspartate aminotransferase family protein | H9N25_04370 | Q43908 | Negative | 1053992 - 1055533 | 57893.3 |
| tonb-dependent receptor | H9N25_04375 | Q9Z3Q5 | Positive | 1055847 - 1058282 | 87619.3 |
| metallophosphoesterase | H9N25_04380 | O34870 | Negative | 1058415 - 1059635 | 46232.1 |
| rrf2 family transcriptional regulator | H9N25_04385 | O68025 | Positive | 1059849 - 1060295 | 16374.2 |
| hepn domain-containing protein | H9N25_04390 | I3R637 | Positive | 1061029 - 1063119 | 78217.4 |
| uroporphyrinogen-iii c-methyltransferase | H9N25_04395 | Q58375 | Positive | 1063213 - 1063983 | 27437.2 |
| tsup family transporter | H9N25_04400 | O34430 | Positive | 1063967 - 1065478 | 54849.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

