Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fasciclin domain-containing protein | H9N25_04305 | Not Available | Positive | 1032604 - 1033353 | 27966.0 |
| duf5008 domain-containing protein | H9N25_04310 | Not Available | Positive | 1033384 - 1035069 | 60326.6 |
| duf4983 domain-containing protein | H9N25_04315 | Not Available | Positive | 1035096 - 1036829 | 61849.0 |
| discoidin domain-containing protein | H9N25_04320 | A4IG42 | Positive | 1036847 - 1038796 | 71784.6 |
| duf4983 domain-containing protein | H9N25_04325 | Not Available | Positive | 1038814 - 1040514 | 61463.4 |
| duf4981 domain-containing protein | H9N25_04330 | Q56307 | Positive | 1040787 - 1043951 | 120626.0 |
| glycoside hydrolase family 27 protein | H9N25_04335 | B3PGJ1 | Positive | 1044095 - 1045297 | 44446.0 |
| hypothetical protein | H9N25_04340 | Q6P6V7 | Positive | 1045330 - 1046838 | 56760.1 |
| hypothetical protein | H9N25_04345 | Not Available | Positive | 1046956 - 1047351 | 14769.8 |
| m23 family metallopeptidase | H9N25_04350 | Not Available | Negative | 1047470 - 1048096 | 24249.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

