Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_04255 | Not Available | Positive | 1016873 - 1017019 | 5689.94 |
| hypothetical protein | H9N25_04260 | Not Available | Positive | 1017171 - 1017956 | 29152.2 |
| duf1543 domain-containing protein | H9N25_04265 | Not Available | Negative | 1017957 - 1018520 | 21592.6 |
| fad/nad(p)-binding protein | H9N25_04270 | P77148 | Positive | 1018776 - 1020479 | 64484.7 |
| susc/raga family tonb-linked outer membrane protein | H9N25_04275 | T2KPJ3 | Positive | 1021496 - 1024498 | 111930.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_04280 | T2KPM5 | Positive | 1024516 - 1026114 | 59887.3 |
| hypothetical protein | H9N25_04285 | Not Available | Positive | 1026129 - 1026803 | 24925.9 |
| duf5007 domain-containing protein | H9N25_04290 | Not Available | Positive | 1026814 - 1027854 | 39076.8 |
| susc/raga family tonb-linked outer membrane protein | H9N25_04295 | T2KMI3 | Positive | 1027890 - 1031045 | 116614.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_04300 | T2KNB8 | Positive | 1031057 - 1032598 | 57099.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

