Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tldd/pmba family protein | H9N25_04205 | O26944 | Negative | 1003944 - 1005578 | 59904.0 |
| hypothetical protein | H9N25_04210 | Not Available | Negative | 1005870 - 1007648 | 67216.3 |
| hypothetical protein | H9N25_04215 | Not Available | Negative | 1007651 - 1009783 | 80125.6 |
| bata domain-containing protein | H9N25_04220 | Not Available | Negative | 1009770 - 1011140 | 50727.1 |
| duf58 domain-containing protein | H9N25_04225 | P9WLX4 | Negative | 1011144 - 1012001 | 33085.5 |
| moxr family atpase | H9N25_04230 | P94474 | Negative | 1012031 - 1013077 | 38957.6 |
| duf4159 domain-containing protein | H9N25_04235 | Not Available | Positive | 1013180 - 1013809 | 24290.6 |
| lrp/asnc family transcriptional regulator | H9N25_04240 | P0A2S0 | Negative | 1013826 - 1014293 | 17808.8 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | H9N25_04245 | Q8A8L4 | Positive | 1014617 - 1015714 | 40558.8 |
| duf1015 family protein | H9N25_04250 | Not Available | Positive | 1015726 - 1016847 | 42280.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

