Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_04155 | Not Available | Negative | 990736 - 990915 | 7088.97 |
| Trna-cys | Not Available | Not Available | Positive | 991095 - 991168 | Not Available |
| tlpa family protein disulfide reductase | H9N25_04165 | A4IQF5 | Positive | 992342 - 993637 | 47966.4 |
| tlpa family protein disulfide reductase | H9N25_04170 | Q5KXL9 | Positive | 993738 - 995036 | 47908.3 |
| ycei family protein | H9N25_04175 | B1J2Y3 | Positive | 995069 - 995710 | 23165.7 |
| c-type cytochrome | H9N25_04180 | Q49128 | Positive | 995909 - 996868 | 35478.4 |
| tonb-dependent receptor | H9N25_04185 | P17315 | Positive | 996966 - 999743 | 99564.5 |
| duf4397 domain-containing protein | H9N25_04190 | Not Available | Positive | 999754 - 1000617 | 30689.6 |
| tldd/pmba family protein | H9N25_04195 | Q58403 | Negative | 1000845 - 1002485 | 59884.2 |
| tldd/pmba family protein | H9N25_04200 | O26944 | Negative | 1002625 - 1003941 | 47346.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

