Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5110 domain-containing protein | H9N25_04105 | A7LXT0 | Positive | 978670 - 981486 | 107872.0 |
| glycoside hydrolase family 3 c-terminal domain-containing protein | H9N25_04110 | A7LXS8 | Positive | 981533 - 983731 | 81136.9 |
| response regulator transcription factor | H9N25_04115 | Q9AE24 | Negative | 984060 - 984953 | 33858.4 |
| hypothetical protein | H9N25_04120 | Not Available | Positive | 985134 - 985673 | 19913.3 |
| tetr/acrr family transcriptional regulator | H9N25_04125 | P42097 | Negative | 985830 - 986453 | 23706.4 |
| helix-turn-helix domain-containing protein | H9N25_04130 | B4TPQ9 | Positive | 986781 - 987623 | 32846.8 |
| deaminase | H9N25_04135 | P77554 | Positive | 987761 - 989083 | 48595.8 |
| ribosomal protein l7/l12 | H9N25_04140 | B1Y7H4 | Positive | 989127 - 989594 | 17156.1 |
| hypothetical protein | H9N25_04145 | Not Available | Positive | 989684 - 989959 | 10048.2 |
| duf4833 domain-containing protein | H9N25_04150 | Not Available | Negative | 990107 - 990688 | 22392.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

