Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldo/keto reductase | H9N25_04005 | Q76KC2 | Positive | 945292 - 946323 | 37828.2 |
| zinc-binding alcohol dehydrogenase family protein | H9N25_04010 | P39400 | Positive | 946326 - 947345 | 36862.9 |
| glycoside hydrolase family 97 protein | H9N25_04015 | D7CFN7 | Positive | 947404 - 949341 | 72909.9 |
| hypothetical protein | H9N25_04020 | Not Available | Negative | 949550 - 949732 | 6842.18 |
| tonb-dependent receptor | H9N25_04025 | T2KM18 | Positive | 950310 - 953498 | 115503.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_04030 | A7LXT5 | Positive | 953529 - 955124 | 58674.5 |
| hypothetical protein | H9N25_04035 | A7LXT4 | Positive | 955148 - 956596 | 51631.9 |
| cellulase family glycosylhydrolase | H9N25_04040 | A7LXT7 | Positive | 956791 - 958308 | 55483.8 |
| cellulase family glycosylhydrolase | H9N25_04045 | A7LXT7 | Positive | 958551 - 959975 | 52689.8 |
| glycoside hydrolase | H9N25_04050 | P23552 | Positive | 960144 - 961736 | 60500.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

