Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-leu | Not Available | Not Available | Positive | 932187 - 932266 | Not Available |
| transposase | H9N25_03960 | Not Available | Negative | 932552 - 933058 | 19532.5 |
| marr family transcriptional regulator | H9N25_03965 | O31472 | Negative | 933060 - 933536 | 18203.1 |
| pas domain s-box protein | H9N25_03970 | P23545 | Positive | 933808 - 935781 | 73639.2 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_03975 | T2KNB8 | Negative | 935894 - 937489 | 59422.0 |
| tonb-dependent receptor | H9N25_03980 | T2KPJ3 | Negative | 937516 - 940695 | 113231.0 |
| helix-turn-helix transcriptional regulator | H9N25_03985 | O34901 | Negative | 941043 - 941930 | 34194.1 |
| doxx family membrane protein | H9N25_03990 | Not Available | Positive | 942148 - 943664 | 55874.3 |
| l-fucose:h+ symporter permease | H9N25_03995 | P11551 | Positive | 943686 - 944957 | 46391.9 |
| l-rhamnose mutarotase | H9N25_04000 | Q8P3K1 | Positive | 944964 - 945299 | 13193.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

