Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_03905 | Not Available | Positive | 922530 - 923198 | 25694.9 |
| duf4199 domain-containing protein | H9N25_03910 | Not Available | Positive | 923215 - 923784 | 20647.0 |
| glycosyltransferase family 2 protein | H9N25_03915 | Q1MJ95 | Positive | 923955 - 924905 | 36181.0 |
| glycosyltransferase | H9N25_03920 | Q92IF9 | Positive | 924974 - 925942 | 37289.1 |
| hypothetical protein | H9N25_03925 | Not Available | Positive | 925939 - 926727 | 29617.4 |
| gh3 auxin-responsive promoter family protein | H9N25_03930 | A0A1J6KGJ9 | Positive | 926773 - 928272 | 55997.1 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | H9N25_03935 | Q5L9P6 | Positive | 928382 - 929542 | 42703.9 |
| rip metalloprotease rsep | H9N25_03940 | O67776 | Positive | 929572 - 930969 | 50986.0 |
| fe-s protein assembly co-chaperone hscb | H9N25_03945 | B4EZU5 | Positive | 931052 - 931591 | 21113.9 |
| duf3817 domain-containing protein | H9N25_03950 | O31485 | Positive | 931796 - 932107 | 11772.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

