Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside 2-deoxyribosyltransferase domain-containing protein | H9N25_03855 | Not Available | Positive | 913712 - 914197 | 18027.4 |
| doxx family membrane protein | H9N25_03860 | Q5UR67 | Positive | 914260 - 914781 | 19917.2 |
| o-acetyl-adp-ribose deacetylase | H9N25_03865 | Q72M93 | Positive | 914797 - 915306 | 18268.2 |
| doxx family membrane protein | H9N25_03870 | A5FLZ4 | Positive | 915320 - 915861 | 20592.8 |
| serine/threonine protein phosphatase | H9N25_03875 | Q8ERS7 | Positive | 915863 - 916591 | 28321.7 |
| appr-1-p processing protein | H9N25_03880 | Q86WJ1 | Positive | 916595 - 917065 | 17688.2 |
| nicotinate phosphoribosyltransferase | H9N25_03885 | P75067 | Positive | 917078 - 918535 | 55086.6 |
| hypothetical protein | H9N25_03890 | Not Available | Positive | 918659 - 919075 | 15578.7 |
| bata domain-containing protein | H9N25_03895 | Not Available | Positive | 919136 - 921178 | 75737.0 |
| dihydroorotase | H9N25_03900 | A3DE07 | Positive | 921175 - 922431 | 45600.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

