Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imidazole glycerol phosphate synthase subunit hisf | H9N25_03805 | A5FFX6 | Negative | 903122 - 903877 | 27189.9 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | H9N25_03810 | A6L6Z1 | Negative | 904182 - 904931 | 28013.0 |
| imidazole glycerol phosphate synthase subunit hish | H9N25_03815 | Q8A7Z4 | Negative | 904933 - 905526 | 21574.0 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | H9N25_03820 | D2QPE6 | Negative | 905726 - 906859 | 42684.0 |
| histidinol-phosphate transaminase | H9N25_03825 | Q11VM5 | Negative | 906861 - 907901 | 38827.4 |
| doxx family membrane protein | H9N25_03830 | Q8ABA9 | Negative | 908019 - 909298 | 48221.5 |
| atp phosphoribosyltransferase | H9N25_03835 | Q11TY6 | Negative | 909348 - 910199 | 30810.6 |
| l,d-transpeptidase family protein | H9N25_03840 | P44285 | Positive | 910475 - 912037 | 60211.6 |
| nudix hydrolase | H9N25_03845 | Q58549 | Positive | 912109 - 912801 | 26497.9 |
| ribose-phosphate pyrophosphokinase | H9N25_03850 | Q98R83 | Positive | 912870 - 913703 | 30083.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

